PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010929824.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 263aa    MW: 29720 Da    PI: 9.2082
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010929824.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH308.7e-104268127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++++ C ++ rtG C++G +CkF+H+p
  XP_010929824.1 42 PGEPDCAYYIRTGLCRFGMTCKFNHPP 68
                    5789*********************97 PP

2zf-CCCH40.16e-1389113327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C+++++tGtCk+G++CkF+H++
  XP_010929824.1  89 QPECQYYLKTGTCKFGATCKFHHPK 113
                     799********************96 PP

3zf-CCCH33.85.9e-11136159427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     ++C ++ rtG+Ck+G++CkF+H++
  XP_010929824.1 136 KECAYYIRTGQCKFGNTCKFHHPQ 159
                     68********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.00124168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.5914169IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-64368IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-54669IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-686113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.33886114IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-1089113IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.16E-690115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-592112IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-7131160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.324132160IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-4134159IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-8136159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4138158IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MHGARPPAAM TEGSSSLDEE AMWQMNLRGS ESMESGPYPE RPGEPDCAYY IRTGLCRFGM  60
TCKFNHPPNR SLAIAAARIK GGYPERVGQP ECQYYLKTGT CKFGATCKFH HPKDKAGMAG  120
RVQLNILGYP LRLNEKECAY YIRTGQCKFG NTCKFHHPQP SNAMVALRGS PVYPPVHSLT  180
TPGQQSYPGG LTNWSLSRTS FIPSPRWQDP SSYTQLILPQ GLVQVPGWNP YPEMVDYERM  240
DQHCFRYCFQ KKTKLCRSKY LAR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010929824.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF91e-125ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A0D2U3991e-135A0A0D2U399_G
TrEMBLF6GX271e-133F6GX27_VITVI; Putative uncharacterized protein
STRINGVIT_04s0023g00370.t011e-132(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-104zinc finger protein 1